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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs62273545 chr3:111270247 A/T 6.53E-5 489 16.27 14.93 16.55 KM Plot
THCA rs62273546 chr3:111271484 G/A 6.53E-5 489 16.27 14.93 16.55 KM Plot
THCA rs62275478 chr3:111284412 G/A 1.01E-8 480 16.3 13.6 9.15 KM Plot
THCA rs62279137 chr3:19956023 A/T 2.16E-7 479 15.87 16.8 11.52 KM Plot
THCA rs62286782 chr3:155578412 G/A 9.52E-5 484 16.57 14.63 9.75 KM Plot
THCA rs62286789 chr3:155585120 G/C 9.33E-5 485 16.57 14.65 9.75 KM Plot
THCA rs62286805 chr3:155602079 G/A 0.000207 487 16.57 14.63 9 KM Plot
THCA rs62292579 chr3:186656777 C/G 0.000214 477 15.68 16.27 31.93 KM Plot
THCA rs62292580 chr3:186656802 A/G 0.000214 477 15.68 16.27 31.93 KM Plot
THCA rs62304052 chr4:84630887 T/C 5.88E-6 483 16.2 12.7 18.47 KM Plot
THCA rs62305668 chr4:88169292 G/T 1.79E-6 485 15.97 16.32 9.23 KM Plot
THCA rs62305682 chr4:88191467 T/C 0.000111 486 16.2 15.78 12.93 KM Plot
THCA rs62305683 chr4:88191601 A/T 0.000125 483 16.02 16.32 12.93 KM Plot
THCA rs62305687 chr4:88201370 A/G 7.5E-6 484 16.6 14.92 13.43 KM Plot
THCA rs62305694 chr4:88210122 G/A 0.000266 488 16.2 15.33 11.33 KM Plot